CASE BROWSER

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Data Dictionary

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Cases

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Cases

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Identifier
Identifier
Age Of Onset
Age Of Onset
Registration Date
Registration Date
DST Profile
DST Profile

FILTER: 8 records

Azerbaijan

Region 1

Belarus

Region 28

China

Region 31

Georgia

Region 20

India

Region 16

Kazakhstan

Region 23

Moldova

Region 7

Nigeria

Region 25 Region 26 Region 14

Romania

Region 38 Region 17 Region 13

Ukraine

Region 39 Region 40 Region 41 Region 2 Region 4 Region 8 Region 9 Region 10 Region 11 Region 12 Region 15 Region 19 Region 30 Region 33 Region 37

* Imported Datasets

Identifiers

Patient identifier Specimen identifier SRR number

Modality

CR (Computed Radiography) XC (External-camera Photography) DX (Digital X-ray) HC (Hard Copy) XA (X-Ray Angiography) CT (Computed Tomography)

Outcome

Completed Cured Died Failure Lost to follow up Palliative Care Still on treatment Unknown [NOT SET]

Case Definition

New Relapse Lost to follow up Failure Other Unknown Chronic TB [NOT SET]

TB Localization

Pulmonary Extrapulmonary Pulmonary and Extrapulmonary Unknown [NOT SET]

DST Profile

MDR non XDR Mono DR Negative Poly DR Pre-XDR Sensitive XDR [NOT SET]

A15 A15.0 A15.1 A15.2 A15.3 A15.4 A15.5 A15.6 A15.7 A15.8 A15.9 A16 A16.0 A16.1 A16.2 A16.3 A16.4 A16.5 A16.7 A16.8 A16.9 A17 A17.0 A17.1 A17.8 A17.9 A18 A18.0 A18.1 A18.2 A18.3 A18.4 A18.5 A18.6 A18.7 A18.8 A19 A19.0 A19.1 A19.2 A19.8 A19.9 U84.3 Unknown

Comorbidity

HIV Diabetes Hepatic diseases Hepatitis B Hepatitis C Renal disease Anemia None Not specified Others COVID-19 Post-COVID-19 Pneumoconiosis Systemically administered glucocorticoids, cytostatics, TNF-α antagonists Psychiatric illness [NOT SET]

Specimen

Biopsy Sputum Other Surgery-caseous masses Surgery-cavity internal wall Surgery-cavity external wall Surgery-infectious granuloma Surgery-healthy tissue Bronchial lavage Ascitic fluid Blood Urine Pleural fluid Cerebrospinal Fluid Paraffin Embedded Tissue [NOT SET]

Microscopy

1 to 9 in 100 (1-9/100) 10 to 99 in 100 (1+) 1 to 9 in 1 (2+) 10 to 99 in 1 (3+) More than 99 in 1 (4+) Saliva Unknown data Negative Not done [NOT SET]

Culture

1 to 19 20 to 100 100 to 200 More than 200 Positive Negative Unknown result Study in progress Not done Nonspecific microflora MOTT [NOT SET]

DST Type

Bactec FL-LPA SL-LPA Lowenstein-Jensen GeneXpert TRUENAT DST [NOT SET]

Biochem

Yes No

Drugs

Imipenem-cilastatin Streptomycin Gatifloxacin Fluoroquinolones Moxifloxacin Linezolid Terizidone Amoxicillin-clavulanate Amikacin Gatifloxacin 0.5 Kanamycin p-aminosalicylic acid Clarithromycin Bedaquiline Isoniazid Capreomycin Levofloxacin Ethambutol Aminoglycosides - injectible agents Pyrazinamide Cotrimoxazol preventive Prothionamide Antiretroviral therapy Rifampicin Pretomanid Ethionamide Clofazimine Delamanid Cycloserine Ofloxacin

Genomes

Sequenced Not sequenced

Transcriptomics

Yes No

Number Of Cases

1 2 3+

TB Profiler

Available Not available

Country

DST Profile

MDR non XDR

Diagnosis

A15.0

Case Details

Please cite the Case Browser as follows

Rosenthal, Alex, et al. "The TB portals: an open-access, web-based platform for global drug-resistant-tuberculosis data sharing and analysis." Journal of clinical microbiology 55.11 (2017): 3267-3282. https://doi.org/10.1128/jcm.01013-17.

The value of this tool is demonstrated by use of it in your research. To support continued development of the Case Browser, please send an email to the TB Portals Program Team (depot_support@niaid.nih.gov) with any publications that made use of it.

Cases

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Azerbaijan

Belarus

China

Georgia

India

Kazakhstan

Moldova

Nigeria

Romania

Ukraine

Identifiers

Modality

Gender

Age Of Onset

Outcome

Case Definition

TB Localization

DST Profile

Diagnosis Code

Comorbidity

Specimen

Microscopy

Culture

DST Type

Biochem

Drugs

Genomes

Transcriptomics

Number Of Cases

TB Profiler

Registration Date Year

Height (cm)

Weight (kg)

Education

Employment

Total Children

Total Contacts

Social Risk Factors

Specimen Count

Microscopy Type

Culture Type

LPA SNP Mutations

Regimen Count

Stem Cell Therapy

CT Descriptors

CXR Descriptors

Cohort:Arm

Patient

Age Of Onset

Provider

Country

DST Profile

Diagnosis

Patient

Age Of Onset

Provider

Country

DST Profile

Diagnosis

Patient

Age Of Onset

Provider

Country

DST Profile

Diagnosis

Patient

Age Of Onset

Provider

Country

DST Profile

Diagnosis

Patient

Age Of Onset

Provider

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DST Profile

Diagnosis

Patient